Galaxy

https://galaxyproject.org/

# service mysqld start

# /usr/bin/mysql_secure_installation

# /usr/bin/mysql -u root -p

mysql> INSERT INTO mysql.user (User,Host,Password) VALUES('galaxy','localhost',PASSWORD('password'));

mysql> FLUSH PRIVILEGES;

mysql> CREATE DATABASE galadb;

mysql> GRANT ALL PRIVILEGES ON galadb.* to galaxy@localhost;

mysql> FLUSH PRIVILEGES;

mysql> quit

# cd /usr/local

# mkdir galaxy

# cd galaxy/

# hg clone https://bitbucket.org/galaxy/galaxy-dist/

# cd galaxy-dist 

# vi config/galaxy.ini

debug = True –> debug = False

use_interactive = True –>  use_interactive = False

database_connection = mysql://galaxy:password@localhost/galadb?unix_socket=/var/lib/mysql/mysql.sock

use_threadpool = true

threadpool_workers = 7

start_job_runners = drmaa

environment_setup_file = True

default_cluster_job_runner = drmaa://-V/

# sh run.sh